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I really don't know how to evaluate such costs: facilities are very important; these fees support departmental research funds, which is great; etc etc—maybe such a high percentage really is best! I'd certainly like a "campus".
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50% is pretty low. Indirects cover all aspects of research costs that cannot be assigned to a single research grant. For example, building and facilities maintenance. Not sure how that cut happened. NIH adds indirects on top of budget. NSF subtracts from.
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