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Looking to plot diploid set of chromosomes with variable coloring at defined regions. Found one (linked). Any others? https://cran.r-project.org/web/packages/chromoMap/vignettes/chromoMap.html …
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Amy Williams proslijedio/la je Tweet
Paper with
@amythewilliams published in@PLOSGenetics, on the effect of crossover interference and sex-specific genetic maps on IBD sharing between relatives. See below for a short thread and the paper. https://twitter.com/ShaiCarmi/status/1141001071856410629?s=20 … https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007979 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Amy Williams proslijedio/la je Tweet
Happy to participate in this massive effort (234 cohorts, 1.4M individuals) to estimate the phenotypic effects of runs of homozygosity.https://www.nature.com/articles/s41467-019-12283-6 …
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Amy Williams proslijedio/la je Tweet
We're recruiting at all levels in our group: postdocs/students/data scientists! Focusing on intersection of genetics, functional genomics and electronic health records. Come with your own ideas or brainstorm with us! email/dm me if interested.
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Fun work on CREST by
@YingQiao52 and Jens Sannerud. Ability to infer pedigree relationships for second degree relatives - aunt/uncles, half-siblings, etc. Also sex-specific maps uncover if half-siblings or grandparent-child pairs are paternal or maternalhttps://www.biorxiv.org/content/10.1101/753343v1 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Amy Williams proslijedio/la je Tweet
The Stephens lab is looking for postdocs - if you have a PhD in statistics, computational biology, or related discipline, and are interested in methods dev and/or analysis of single cell transcriptomic data please email me at mstephens@uchicago.edu with CV. Please RT!
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In case you missed it -- TWO tenure-track faculty positions at
@Cornell in the Comp Bio department. Come join a great department on a beautiful campus!https://twitter.com/AndyClarkCornel/status/1151212478765961216 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Amy Williams proslijedio/la je Tweet
New preprint on a major extension of our ARGweaver method and its application to the problem of detecting ancient introgression between hominins, with some intriguing new findings. Work led by Melissa Hubiszhttps://twitter.com/biorxiv_evobio/status/1145531927841169410 …
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Amy Williams proslijedio/la je Tweet
Happy to contribute to a study led by
@amythewilliams on the effect of crossover interference and sex-specific maps on genetic sharing between relatives (i.e., number and lengths of IBD segments). Great work by @MadisonCaballe1 at Amy's lab. 1/4https://www.biorxiv.org/content/10.1101/527655v2 …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
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"... though many sixth cousins share no IBD regions, these numbers suggest that an average person in the UK shares IBD regions with over 19,000 sixth cousins."
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Some fun work on the effects of crossover interference and sex specific maps on relatedness levels. Both have an impact, and modeling both lead to better fits to IBD sharing quantities from real relatives.https://www.biorxiv.org/content/early/2019/01/22/527655 …
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Amy Williams proslijedio/la je Tweet
Proud to announce "Rapid evolution of a skin-lightening allele in southern African KhoeSan" is now online at PNAS
@PNASNews. Led by fab PhD Meng Lin (now at USC with@CharlestonCWKC),@rebeccasiford@genetisaur@popgenepi@cdbustamante & Stellenbosch U https://www.pnas.org/content/early/2018/12/05/1801948115 …pic.twitter.com/6OApqe5YZg
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Amy Williams proslijedio/la je Tweet
New!
@amythewilliams & colleagues present DRUID, an IBD-based method to infer relatednesshttps://bit.ly/2yvL7jBPrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Amy Williams proslijedio/la je Tweet
Drumroll ..... v proud to announce the new Center for Population Genomic Health
#popgenhealth at@IcahnMountSinai@BronfmanInst@NouraAbulHusn#BarbaraMurphy#JudyCho. Bringing genomic discoveries to frontline clinical care. https://www.popgenhealth.com/ Hiring GCs and PDs. Pls RT.Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Excited to announce DRUID,
@MDRamstetter's method for inferring relatedness between samples by analyzing the IBD profile of ungenotyped ancestors. Considerably improved performance compared to both traditional methods & another multi-way relatedness methodhttps://www.biorxiv.org/content/early/2018/01/04/243048 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Updated relatedness inference bake off. Now with real data for 7th ° pairs. IBD segments best but slower vs AF-based http://biorxiv.org/content/early/2017/06/09/106013 …
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Amy Williams proslijedio/la je Tweet
Check out our recent
@NatureEcoEvo#nutrigenomics paper, led by@yekaixiong, a behind-the-scenes blog & much more at http://keinanlab.cb.bscb.cornell.edu/news/items/our-recent-publication-nature-ecology-and-evolution-calls-personalized-nutrition …pic.twitter.com/gbsnLwFCpr
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Our latest work comparing methods for inferring relatedness using thousands of relatives is up http://biorxiv.org/content/early/2017/02/04/106013 …
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Amy Williams proslijedio/la je Tweet
Looking for a postdoc interested in germline mutation and its evolution: http://life.mcmaster.ca/~brian/evoldir/PostDocs/ColumbiaU.PopulationGenetics …. Please RT.
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