Ahmed Mahfouz

@ahmedElkoussy

Computational biologist | neuroscience, genomics, bioinformatics, single cell omics

Leiden, The Netherlands
Vrijeme pridruživanja: srpanj 2010.

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  1. Prikvačeni tweet
    17. ruj 2019.

    Our benchmarking study of methods to automatically identify cell populations in single-cell RNA sequencing data is now published . Very proud of all the work done by Tamim and Lieke!

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  2. proslijedio/la je Tweet
    prije 22 sata

    Our huge Patch-seq effort is out on bioRxiv: . 1320 neurons in mouse motor cortex patched, sequenced, and mapped to a scRNA-seq atlas. 642 reconstructed morphologies! Our running joke was that it was a bit like catching Pokemons. (1/n)

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  3. proslijedio/la je Tweet
    4. velj

    Reminder: don’t forget to submit an abstract for the BioSB 2020 conference in April! Final submission deadline is 15 February 2020.

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  4. proslijedio/la je Tweet
    28. sij

    Our educational guide for nanopore sequencing in the classroom is out in . Introducing bioinformatics students to the realities of data acquisition, an educational collaboration of at and myself at .

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  5. 1. velj

    Come and join us at , April 28-30 for an exciting meeting. Preview our confirmed speakers & register: And stay tuned for more updates!

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  6. proslijedio/la je Tweet
    30. sij

    We now have a web page for the meeting! Registration will open in late February, and more info to come soon...

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  7. proslijedio/la je Tweet
    7. sij

    Thrilled to be part of with this lineup!!! . Thank you and colleagues!

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  8. proslijedio/la je Tweet
    7. sij

    All fresh & energetic after the Xmas break and looking for a new adventure? We have several open positions in Amsterdam for postdocs in bioinformatics or statistical genetics with an interest in optimizing interpretation of GWAS results for brain-related traits. Retweet is🙏

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  9. proslijedio/la je Tweet
    27. pro 2019.

    We now have 2 PostDoc positions open with very exciting opportunities to contribute to the Lung Cell Atlas () in health & disease: scRNA/ATAC-Seq, multiplexed FISH, 3D organoids, international consortia, great team! Please RT

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  10. proslijedio/la je Tweet
    20. pro 2019.

    Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics

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  11. proslijedio/la je Tweet
    20. pro 2019.

    UMAP is often said to be superior to t-SNE because it is better at preserving global distances. Dmitry and I showed that this is because by default, t-SNE initializes randomly whereas UMAP initializes with Laplacian eigenmaps.

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  12. proslijedio/la je Tweet
    17. pro 2019.

    Don’t forget to submit your ideas for a breakout session at the . Deadline: 15 January 2020

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  13. proslijedio/la je Tweet
    8. pro 2019.

    Today's reading list in cell-type annotation & labeling scope (in order of publication date): 1. 2. 3.scMatch: Notes in progress! Interesting strategies employed. Thanks for the work & datasets🙏

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  14. proslijedio/la je Tweet
    5. pro 2019.

    Are you a computational biologist with a fascination for cellular regulation? Make sure to check out this postion in the labs of Thijn Brummelkamp and Lodewyk Wessels : Mapping cellular regulation from 130 genome-wide phenotype screens

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  15. proslijedio/la je Tweet

    For our English speaking followers: The Philips & LUMC team developed an algorithm with which it is possible to use eight times less data than normal and still reconstruct an MRI image of a knee that is almost as good as one using the usual amount of data:

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  16. proslijedio/la je Tweet
    2. pro 2019.

    Incredibly proud of our " & " team, selecetd as strongest performer in the challenge multi-coil 8x. Learn more at . Thanks to the organizers , ! Great collaboration between and !

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  17. proslijedio/la je Tweet
    1. pro 2019.

    Congratulations, Sahar! And an example of a great collaboration between Philips, LKEB and Gorter!!

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  18. proslijedio/la je Tweet
    29. stu 2019.

    We kicked-off! Lots of exciting discussions on how we plan to take genetic findings for brain disorders to the next level

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  19. proslijedio/la je Tweet
    16. stu 2019.

    Genetic mapping and evolutionary analysis of human-expanded cognitive networks. Fantastic work!

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  20. proslijedio/la je Tweet
    7. stu 2019.

    Eye opening article on Elsevier. "Every time we pay a $3000 article processing charge, only $1800 supports the publishing process, while the remaining $1200 goes directly to Elsevier shareholders." They suggest you ask for $400/hr when Elsevier requests that you review a paper.

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  21. proslijedio/la je Tweet

    I want to give a little more background and detail on some of the new things we're doing at If you read this and have questions or concerns, I'd love to answer them.

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