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Andrew Carroll proslijedio/la je Tweet
Looking for a new opportunity at a high-growth biotechnology startup bringing AI/ML to drug discovery? BigHat is recruiting a Technology Development Specialist to build our high-throughput, automated platform for antibody production and characterizationhttps://bit.ly/2SjD5AO
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I really like this approach. I had a similar reaction about mapping after reading the Learned Index Structure paper. This work looks interesting and promising. Relevant to mapping, use of minimizers, similarity detection, and maybe assembly. Very cool.https://twitter.com/mike_schatz/status/1222918254806462465 …
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Andrew Carroll proslijedio/la je Tweet
HG002-DataFreeze 1.0 is now available to help guide new assembly and evaluation methods. Data sharing is in partnership with
@GenomeInABottle and@HumanPangenome.https://twitter.com/aphillippy/status/1221866601164599303 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
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Andrew Carroll proslijedio/la je Tweet
Don't miss our update on Princess
@PacBio developer workshop#PAGXXVIII#PAG2020 starting in 30 min (Golden West Room). Together with many other exciting talks from@acarroll_ATG ,@sergekoren@tobiasmarschal etc. Hope to see many of you there https://programs.pacificbiosciences.com/l/1652/2019-11-12/4189p6 …@BCM_HGSCHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
"If you missed the opportunity to participate in the first round and you think your project fits with the goals of this program, please consider applying. Applications for the second cycle open on December 16, 2019, and close February 4, 2020."https://twitter.com/cziscience/status/1213144257294471174 …
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Andrew Carroll proslijedio/la je Tweet
Want to help evaluate the new
@GenomeInABottle v4.1 small variant benchmark for@NIST RM8391 (HG002) that enables you to assess accuracy in more difficult regions, including many segmental duplications, difficult-to-map regions, and the MHC? See details athttps://groups.google.com/d/msg/giab-analysis-team/xrgQuDgSGGM/U75kv4mlAgAJ …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Andrew Carroll proslijedio/la je Tweet
What's striking to me about this is the top reasons: - HR says: Women don't receive as much sponsorship - Men say: There are fewer qualified women in the pipeline - Women say: Women are judged by different standardshttps://twitter.com/arghavan_salles/status/1207838814103691264 …
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If you are coming to
#PAGXXVIII, stay for the Jan15@PacBio#SMRT meeting (http://ow.ly/BJen50xjAFe ). I'll talk on variant calling with HiFi data, incl difficult regions, and results from new projects. Other great speakers@sedlazeck@sergekoren@Magdoll@JoanWWong@zevkronenbergHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Andrew Carroll proslijedio/la je Tweet
ML performs best with large datasets, but sometimes there isn't as much data! In this blog post from our genomics team, Ren Yi investigates how to best learn from data in a larger domain to improve on a specialized one.
Learn more → https://goo.gle/2PEYN17 pic.twitter.com/K1crmjUE1p
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For a deeper technical dive, please see the NeurIPS submission "Learning from Data Rich Problems" https://arxiv.org/abs/1911.05151 . Ren's intern mentors
@gunjan_baid and@pichuan were also instrumental. Ren and@gunjan_baid will be at NeurIPS ML4H, please find them and talk science & ML!Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
This blog details work from Ren Yi in her summer internship. It investigates strategies to improve ML performance in specialized problems (in this, exomes) by using similar, data-rich areas (WGS). Ren will present this work at
#NeurIPS2019 ML4H workshophttps://google.github.io/deepvariant/posts/2019-12-06-covering-all-your-bases-strategies-to-expand-training-data-for-specialized-genomics-problems/ …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Andrew Carroll proslijedio/la je Tweet
Clair is the successor of Clairovoyante. For ONT data, Clair achieves the best precision, recall, and speed as compared to several competing programs, including Clairvoyante, Longshot, and Medaka.https://twitter.com/biorxiv_bioinfo/status/1202618920999510018 …
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Very nice method and investigation. There are many good investigations about training (e.g. use of downsampling to improve general performance and generalization across references).https://twitter.com/aquaskyline/status/1202629291290218496 …
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Andrew Carroll proslijedio/la je Tweet
Nice Nature article on visualization in genomics! Some nice discussion from
@asiepel of disseminating results through creating new browser tracks, and even a few nuggets at the end from yours truly
https://www.nature.com/articles/d41586-019-03705-y …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Andrew Carroll proslijedio/la je Tweet
Very excited to announce my latest WebAssembly project:
http://bam.bio
It's a playground for samtools, a genomics CLI that I ported from C to #WebAssembly so it can run directly in the browser!pic.twitter.com/qgWP1z9G02Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Andrew Carroll proslijedio/la je Tweet
Oh look, it's samtools running in the browser!
#bioinformatics#webassembly This is just a preview, stay tuned for more.pic.twitter.com/77Et1mmj3KHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
This is fantastic work! One thing I haven't seen mentioned yet is the transmission rate in Table S1 for HET+HET parents -> (72% HET). A summary of events violating HWE could be very valuable for refining methods (along with a run of HG002)https://www.biorxiv.org/content/10.1101/848366v1 …
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It will be really interesting to see how this develops as a model for supporting bioinformatics methods goes. I could see this as a template for a pre-competitive initiative from industry too. Congratulations to the funded proposals!https://twitter.com/ChanZuckerberg/status/1195027971083423746 …
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Andrew Carroll proslijedio/la je Tweet
If you're calling small variants with
@PacBio#HiFiReads, check out the newest version of DeepVariant, v0.9, with a new model trained including PacBio Sequel II System Chemistry 2.0 data. Internal testing shows improved precision and recall for all previous chemistries.https://twitter.com/acarroll_ATG/status/1194786628759216128 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi
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