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Remember that practical we did a couple of weeks ago for 2nd year BioMed students using BLAST? It went well. Now, here is an idea for a question to be included in the coursework: discuss what is wrong in the recent preprints about 2019-nCoV
#coronavirus that use BLAST :)Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
This list is now updated to take into account a complementary list kindly provided by
@C_MulasPrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Here is a manually curated list of undergraduate research fellowships, academic and industrial placements, summer schools and summer research projects, focusing on the area of gene regulation in the UK and EU https://generegulation.org/undergraduate-studentships-placements/ … Please reply to add your programs.
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Here is an updated version of this lecture: http://generegulation.org/teaching/BS320_Lecture4_Teif_v14_2020.pptx …. If you provide feedback by Friday 2pm (UK time), we can still incorporate changes.
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Refreshing an undergraduate lecture on gene regulation for Friday. What are the most exciting recent developments in gene regulation that you'd suggest to include?
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Lab meeting in Zest after Chris's submission of his PhD thesis. Wishing Chris all the best for the Viva!pic.twitter.com/STfpf1Xrpa
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For example, if I want to create a FASTA file with mutation NM_000520.6:c.1274_1277dup, doing it manually is quite inconvenient (getting the FASTA from NM_000520.6, then finding location 1274, etc). Is there some database where I can click on a mutation and get FASTA?
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I am now trying to reverse-engineer a set of several human DNA sequences with "famous" mutations, to give them to students to detect the associated Mendelian diseases. Where can I get such sequences without manually composing them?https://twitter.com/TeifLab/status/1216110606727684096 …
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Happy to announce that this manuscript led by Enoch Boasiako Antwi and
@IshaqueLab in collaboration with Don and Ada Olins,@MatthiasBieg, Tobias Bauer, Zuguang Gu,@bb_610,@CaptainSysBio, and with@TeifLab's modest contribution, in now accepted for publication in@BiologyOpenhttps://twitter.com/biorxivpreprint/status/1117262106066333701 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
May be too much to ask, but is there some online tool where students can upload FASTA file with DNA sequences (or just paste one single DNA sequence) and get the list of detected mutations as output? P.S. Tools which need local installation are not an option for this practicalhttps://twitter.com/TeifLab/status/1214327801505075201 …
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@nzradu this is the practical that we discussed in the car. It's in a week :) Which tools did you have in mind?Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Could you please suggest simple online tools to use for a 1-hour practical for BioMed undergrads who did not have any exposure to bioinformatics? Story plot: they are given cfDNA "from septic patient" to determine what's in there, as a matter of life & death. Any suggestions?
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Happy New Year to our friends and colleagues! This is a third attempt of the new lab photo :) We still need to make a proper winter photo :) As a bonus, also included a couple of historic photos with one of us after university graduation and PhD defense :)pic.twitter.com/62VKEDl8Vy
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This is a cool opportunity for our undergraduate students to go to Japan - everything is paid by NIG if you are selected https://www.nig.ac.jp/jimu/soken/intern/2020/index.html … Application deadline January 7, 2020.
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Teif Lab proslijedio/la je Tweet
The history and mystery of chromatin [video] https://dune.une.edu/pharmsci_facpres/3/ … Recent lecture by Ada and Don Olins about the history of the chromatin field and their current research. BTW, reference to Otto Bütschli (1892) for the model of liquid-liquid phase separation.
#3DgenomeHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
This looks like an interesting program by
@openlifesci: A mentoring & training program for Open Science ambassadors in Life Science https://openlifesci.org/ 15-week long personal mentorship and cohort-based training. Application deadline: December 8, 2019.#openscienceHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Teif Lab proslijedio/la je Tweet
#PhDone yesterday! Thank you to@DougVer and@TeifLab for being great examiners and an interesting discussion. Never expected to be asked for an artwork during the Viva!pic.twitter.com/nwRGJBDTiO – mjesto: Human Genetics Unit - Western General Hospital
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We started compiling a list of UK graduate programs and placement opportunities in the area of gene regulation: https://generegulation.org/graduate-programs/ … Initially it was intended only for our students, but may be it will be useful for others as well. Please reply to suggest your programs
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Teif Lab proslijedio/la je Tweet
First Tweet! The next big meeting of the International Nucleome Consortium will be on March 10-11, 2020, in Krakow, Poland. Below are some photos from our previous meeting in Brussels. Please follow this account for further updates!
pic.twitter.com/UtedMt6bxl
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Another interesting effect reported in this paper. Reviewers rightly asked us to clarify the role of Cohesin in CTCF-induced chromatin boundaries. So here it is: the presence of Cohesin makes asymmetric nucleosome arrays near CTCF more symmetric. 10/npic.twitter.com/aO10ozPLDx
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