Keith Robison

@OmicsOmicsBlog

Computational biologist in drug discovery since '96.

Vrijeme pridruživanja: veljača 2010.

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  1. proslijedio/la je Tweet
    prije 15 sati

    ZipSeq from the Krummel lab ( ) prints spatially-patterned barcodes onto live cells within intact tissues. After dissociation and scRNA-seq, cells can be mapped to their original location!

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    prije 4 sata
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    prije 4 sata

    Neutrons can “see” water in a way that other light/particles can’t. Opens up enzyme mechanism and other biological water aspects.

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    prije 4 sata

    Largest flux of neutrons in the world ... in 2023. Many thanks to for showing us around and educating us on neutrons.

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    prije 14 sati

    A preprint has errors and peer reviews posted directly as comments prompt a withdrawal. Meanwhile, “NEJM ‘is looking into the matter,’ but the journal has not posted a correction or update” regarding erroneous claims of asymptomatic transmission in a peer reviewed article.

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    Have you supervised a brilliant PhD student in bioinformatics or systems biology, now is your chance to nominate him/her for the BioSB Young Investigator Award!

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    prije 5 sati

    Question to bioinformatics/comp science folks: What alternatives to Docker are there that can be used with Nextflow (or similar) and that won't make our IT security team come up in spots? Please RT.

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    Here's my analysis for today - take *every single* base in and blast each base *individually* against nt. Then I'll tally up the totals to give me (1) the exact animal this came from, and (2) any evidence of recombination/mutation. What could possibly go wrong?

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    Wow, the national archive system is letting ICE destroy records including complaints about civil rights violations and shoddy medical care in detention centers.

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  10. proslijedio/la je Tweet
    prije 23 sata

    All your favorite viruses in black, white and red watercolor

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  11. proslijedio/la je Tweet
    prije 23 sata

    oh cool someone printed out their conda environment

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    prije 13 sati

    For one of the pipelines I'm working on, I recently used Salmon to quantify proteins in a metagenome...and I'm not sure if this was a very bad idea. I would love to hear if this is a very bad idea, or if it's ok. Pipeline here:

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    I've gone to the dogs today. But today is much like any other day here @ Ginkgo: we have a dog room! Bilboans can bring their canines to work. Whenever things aren't working in the lab I find there's nothing like a bit of quality pooch time to make one feel right as rain again.

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    Odgovor korisnicima

    There are hundreds of packages for everything, but some of the best ones are only in R, and others in python. Given that you can run R in python and viceversa, what you say is a must.

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    We Bilboans are a social lot, and always looking for a chance to celebrate. Today? Our first ever fika! !

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  18. proslijedio/la je Tweet

    The top criticism I've received about this article is my ref to the pandemic panel being all-male. Some say that comment is gratuitous. 2 points: - >90% of the world's public health frontlines are female - Trump panel is also all-white: compare w/ epi team 2014

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  19. proslijedio/la je Tweet

    The high mutational burden of smoking in non-malignant lung airway cells. Terrifying

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  20. proslijedio/la je Tweet
    prije 17 sati
    Odgovor korisnicima

    We have a list of 189 prokaryotes covering a broad taxonomic range here: . It is based on GTDB. All RefSeq, so should all have annotation. We calculated FastANI between all genomes to make sure there are no close genomes (see website).

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