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And the real trick is making all this reversible. I was expecting about 20 pages of describing how they did that, and found bupkis.
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I checked again, and found a short section in the supplemental that I hadn't noticed, which is enough to decipher it. Turns out the 50 dimensions are known chemical and medicinal properties, so it's not really "auto-encoding"; instead they're giving it a ton and a half of data.
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