Noah Reid

@NM_Reid

Assistant Research Professor at UConn. Interested in evolutionary genetics, biodiversity, natural history, bioinformatics and computational biology.

Vrijeme pridruživanja: srpanj 2012.

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  1. proslijedio/la je Tweet
    1. velj

    In the past week people have correctly expressed concern over the twitter piling-on re . I want to share a few thoughts about whether twitter is a suitable place for this to play out... [thread]

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  2. 31. sij

    Is there a population genetics equivalent of the Woods Hole molecular evolution course?

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  3. proslijedio/la je Tweet
    30. sij

    Now up on Eco-Evo Evo-Eco blog, two posts on The first is a neutral narrative about my role and insight. The second link to a growing spreadsheet listing retractions, questions, and papers that are confirmed to be OK

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  4. 30. sij

    properly simulated data will be MUCH harder to detect. and every year, mountains of graduate students in a very competitive environment are developing exactly the necessary skills. I don't know what to say except that this really disturbs me.

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  5. 30. sij

    2) if this is indeed fraud, the only reason it was caught is that the responsible person didn't know how to simulate data. next to becoming a credible expert in a scientific field, getting an academic job, and publishing loads of papers, learning to simulate data in R is TRIVIAL.

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  6. 30. sij

    throwing my 2c in on the retraction scandal: 1) twitter *can* be horrible, but the response to this I am seeing is so generally mature and supportive of the folks who are hurt by it, that I am encouraged.

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  7. 29. sij

    I love a good twitter dunkfest, but I would love so much more to see a really ruthless yet accessible takedown of this in the actual wall street journal.

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  8. 25. sij

    I don't do politics on twitter much, but I think this is important.

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  9. 22. sij

    I would love to see a history of usage of the (to my ear) human-sounding"favorable/unfavorable" vs the more detached and clinical "beneficial/deleterious"

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  11. 15. sij

    It seems like there should be a german word for the feeling you get when you've searched google scholar on a topic 100 times and then somebody tells you about a paper with a million citations and all your key words in the title and you somehow missed it.

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  12. 9. sij

    mytool --fq1 <(zcat $FQ1 | sed 's/..$//;n;n;n') --fq2 <(zcat $FQ2 | sed 's/..$//;n;n;n') the sed command edits only every 4th line, eliminating the risk of off-target edits, which are rare but possible b/c of ascii encoded phred Q scores.

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  13. 9. sij

    Here's a new-to-me bioinformatics trick: I'm using a tool that chokes on /1 and /2 tags appended to my fastq read names. To fix this, I'm using a process substitution to edit them out on the fly

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  14. 9. sij

    Is anybody out there incorporating UMIs into RADseq data? How does your workflow go?

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  15. 8. sij
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  16. proslijedio/la je Tweet
    7. sij

    The relentless spread of the down the Australian east coast over the past four months ( Hotspots data from Sep 3 2019 to today; full screen recommended)

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  17. 31. pro 2019.

    honestly thinking of ditching streaming altogether in favor of some kind of piracy-based solution.

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  18. 31. pro 2019.

    for the parents out there: I am finding that streaming video services basically could not serve parents any worse. how are you managing the content and timing of what your kids watch?

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  19. proslijedio/la je Tweet
    20. pro 2019.

    7 Juglandaceae genomes with a focus on disease associated gene families! Congrats to grad on his 1st paper! Congrats to

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  20. 20. pro 2019.

    seeing a lot of debate (rage?) about academic societies and open access. which academic societies HAVE moved all their publications to open access? do they still have funds to support other activities? I would love to see a model.

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