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We made public: 1.5 million neurons, cell-level activity during multiple behaviors 15 TB raw, 56 GB compressed 18 fish whole-brain data, ~100k neurons/fish Data and code: https://github.com/xiuyechen/fishexplorer … Paper: https://www.sciencedirect.com/science/article/pii/S0896627318308444 …pic.twitter.com/7EdQ4oisaH
The data are open, but we are always interested in discussions or collaborations.
Data collected by @muyuuyum, analyzed by @XiuyeChen and colleagues, collaboration with @EngertLab and @HSompolinsky, @harvardbrainsci and @HHMIJanelia
#zebrafish #openscience
Pardon my ignorance, but how does this data compress so efficiently? Seems like it's 26700% compression?
I think he's counting the 15TB of raw data and only exports the segmented data (per neuron), but I have to check. In any case, they use Dropbox to share the data, which makes the whole zip impossible to download.
Exactly, the compression comes from cell segmentation. The data are now on FigShare, https://figshare.com/s/16927195662ea9ff29c7 …, with DOI 10.25378/janelia.7272617, I hope that downloads better. Let us know
High-quality data sharing like this is a game changer!
Cool data and analysis! Would be interesting to interactively explore the dynamics. Check out interactome we developed for #celeganshttps://github.com/shlizee/C-elegans-Neural-Interactome …
Also connect neural activity with physical body model?
Well, at least now I know why Tesla auto-drive keeps demanding to "go upriver and spawn."
@MInkorrekt das klingt nach 1 spannendem Thema
Nah, not enough neurons :-)
Gotta do something similar for primate data!
@fulhack something fishy here
@normanrz sth for webknossos? :)
Do you consider to analyse some interesting behaviours like instinctions and its relational concepts. Running away from a hunter or hiding in sand for example and implement it to the Human made systems such as AI?
This is interesting
Let the data mining and model training begin!
Nice! When can I use this to drive a fish in the @unity3d game engine?
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