Schrödinger's K
The first 6 clusters in genome space. There is no one right way to choose the number of groups, it depends on what the purpose is. The results are not arbitrary, only the choice of k is somewhat arbitrary (one can use CV to choose a good k). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1310579/ …pic.twitter.com/5ayhBl0YK7
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I recently read an interesting study about choosing K. They found that the Bayesian Information Criterion (BIC) worked the best.https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2648762/ …
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