Kamil S Jaroň

@KamilSJaron

weird genomes lover and obsessed by reference-free characterization of them. Coauthor of working with

Vrijeme pridruživanja: listopad 2015.

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  1. Prikvačeni tweet
    23. sij

    Check my latest hobby project: Peculiar genomic Observations, a webpage for collecting strange observations in hopefully useful resource for non-model genomics. 1/3

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  2. proslijedio/la je Tweet
    30. sij

    Introducing Sapling: Accelerating Suffix Array Queries with Learned Data Models with and .

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  3. proslijedio/la je Tweet
    23. sij

    Does anyone have experience calling DNA methylation (5mC) from *previously* generated PACBIO data? How do-able is it? What are the considerations? Please retweet.

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  4. 27. sij

    I know I am a year delayed, but this... TLDR; RAD-seq has biases, recommend checking this paper before do your sequencing

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  5. 24. sij

    You can extract kmer pairs directly using our fork of KMC, that works natively on kmc index files: Uses much less memory and it's lot faster! 🔥

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  6. 24. sij

    New v0.2.2 is out This time it's vastly heroic work of : - new improvements to 1n estimation for pentaploids and higher ploidy levels - new informative warnings when 1n estimate might be shaky - AAAAND 👇

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  7. proslijedio/la je Tweet
    13. sij

    Glad to see GenomeScope 2.0 being used to profile the tetraploid rose genome!

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  8. 23. sij

    The idea is to collect unexpected observations regardless of whether the explanation is biological, technical or does not exist yet. A catalogue of peculiarities. 3/3

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  9. 23. sij

    If you find anything peculiar in genomic data, please, contribute! And I pledge that if I get more than ten observations till 2021, I will write a manuscript about it. 2/3

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  10. 20. sij

    This is a prime example of how academics can publish books (and their updates!) in a moral way! Thank you for this!

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  11. proslijedio/la je Tweet
    19. sij

    We're now at over 310 tools, and at the excellent suggestion of I have added a sheet with reference to reviews and lists of tools as well as cases where benchmarking has occurred. Keep 'em coming!

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  12. proslijedio/la je Tweet
    19. sij

    Super excited that our new pre-print is up on . Genome-wide search for parent-of-origin allele specific expression in Bombus terrestris.

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  13. 17. sij

    Not sure if I am speaking for all the software developers, but I would say... Be part of the community, don't be afraid to report bioinfo software problems!

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  14. 17. sij

    1/ ended up when I realized how little time people can spend on soft development in science compared to commertial programs 2/ ended up when I started to work on and realized how useful is when people report problems

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  15. 17. sij

    How my "bug reporting mindset" was changing over the years: 1/ don't report software problems, it's probabaly you who f*ed it up 2/ don't report software problems, you can find a workaround faster 3/ find a workaround, open an issue, developers will appreciate it

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  16. 15. sij

    Is there anybody writing a grant on reduction of genetic diversity in Australia after this massive fire? If yes, can I be on it too?

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  17. proslijedio/la je Tweet
    14. sij

    If you are not in , or can't attend the session, here is my slide deck on Peregrine Assembler and Cannabis genome assembly results: If you have any questions, let me know.

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  18. proslijedio/la je Tweet
    13. sij

    Blaxter: 158 species have data generated. 94 submitted to public databases - no embargo and published ASAP via short announcements. Goal is free data for all! workshop

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  19. proslijedio/la je Tweet
    13. sij

    .0.1 is out, fixing previous issues. It identifies the best dataset for assessing the completeness of your assemblies and gene sets. It covers Bacteria, Archaea, and Eukaryota 🦠🐌🍄🍀. Now also on , thanks to . Visit

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  20. proslijedio/la je Tweet
    12. sij

    Pavel Pevzner's description of repeats in genome making me feel at home as an ex-physics. (Yes, I did spend some time learning topology.)

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