Awesome! Great work Nate.https://twitter.com/NathanGrubaugh/status/1055783796207992832 …
Update: We added 985 (
) West Nile virus genomes to 
https://nextstrain.org/WNV/NA pic.twitter.com/zIUHdu8WXj
Deze collectie tonen
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Thanks, though credit should go to all the folks doing surveillance, sequencing, and sharing data, who get a much smaller piece of the recognition, but who’s work we could not do without. Plus
@hamesjadfield - I owe him lots of
Richard, do let us know if you find any mistakes in the data - I think I owe you a couple of 
already from spotting previous errors 
(as tracked by our Beer-O-Meter: https://andersen-lab.com/secrets/ )
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Challenge accepted! Positions that look weird to me are 6204 and 10393. They mutate about 50 times on the tree in very similar patterns. https://nextstrain.org/WNV/NA?c=gt-nuc_6204 … Do you wobble primers?pic.twitter.com/nuj6wNR73b
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Lots of methods used to generate these from the different labs, but no, we don’t use wobble primers. Primers here: https://docs.google.com/spreadsheets/d/1zMfUv1IV5-Sy-AeOPhKHdoZMUxhD1R_RsB5gPswqx40/htmlview …
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One thing that does intrigue (and bother) me is that NS4A-A85T that differentiates WN02 from SW03 pops up multiple times in the tree. Perhaps it’s real, because this isn’t coming from just one lab, but not sure what to make of it. Maybe convergent evo?pic.twitter.com/5FH4kIWbCn
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Parallel change is not necessarily adaptive, unless it matches phenotypic/environment changes. Parallel change can also indicate neutral variation.
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