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The past weeks have demonstrated that centralization poses concrete threats we can no longer condone.
The home of #Guix, #FreeSoftware, #HPC, and #OpenScience is on Mastodon: join us!
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Guix HPC Project
@GuixHpc
Reproducible software deployment for high-performance computing.
Free yourself: Join the #Guix community on the Fediverse. ☛ joinmastodon.org
hpc.guix.infoJoined February 2018
Guix HPC Project’s Tweets
🐍 Packaging #Python software for #Guix? The new 'pyproject' build system provides support for PEP 517.
👉 guix.gnu.org/manual/devel/e
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Six years ago, before another #OpenSSL security fix, #Guix gained "grafts": a mechanism that lets packagers deliver security updates without entailing rebuilds/redownloads of dependent packages.
👉 guix.gnu.org/en/blog/2016/t
A key enhancement of functional pkg mgmt!
#infosec
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Now's a good time to join the growing #GNU #Guix, #HPC, and #OpenScience communities on Mastodon, the federated social media!
👉
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☕️ Pour découvrir comment démarrer avec #Guix, pour du #HPC ou de la #RechercheReproductible, rendez-vous au Café Guix en ligne !
📅 mardi 25 octobre, 13h-14h
▶️ hpc.guix.info/events/2022/ca
Cc:
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Using #Jupyter? Wondering how to keep your #Python environments under control?
Check out Alice Brenon's talk on the journey from irreproducible notebooks to #Guix-controlled environments. 👇
▶️ 10years.guix.gnu.org/video/taming-t
#Guix10Years #DigitalHumanities #OpenScience
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#Containers? #Guix?
Learn about all things containers in #Guix in this new cookbook section by Ricardo Wurmus:
👉 guix.gnu.org/cookbook/en/ht
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We provide a #Reproducible and end-to-end analysis #pipeline for wastewater sequencing that is able to uncover #SARSCoV2 lineages. we use for reproducibility. Our data analysis framework works with data from a variety of locations and sequencing methods.4/n
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You enjoy #Guix but miss /bin, /lib, & co.?
You'll love the new 'guix shell --container --emulate-fhs'!
👉 guix.gnu.org/manual/devel/e
GIF
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uses a saved state of #dependencies at a fixed point and deploys the exact same environment at anytime with only 2 text files.
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🧐Ever wanted to make your research more #openscience #reproduciblescience?
Find out how improved our research in our #OpenAccess paper in
📍rdcu.be/cWRvF
📍doi.org/10.1038/s41597
cytometry analysis is shown
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A non-coding way to contribute to #GNU #Guix is to translate it.
👉 Get started with Lepiller's excellent tutorial!
📺 10years.guix.gnu.org/video/let-s-tr
#FreeSoftware #i18n #Guix10Years
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Want to contribute code to #GNU #Guix beyond packages?
👉 Do not miss Poiret's guided tour of the source tree!
📺 10years.guix.gnu.org/video/guixy-gu
You'll be surprised to see the variety of code in there, from #Linux systems code to high-level functional code!
#FreeSoftware
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At #Guix10Years, former intern Danjela Lura talked about her work, her experience, and how it influenced her career 👇
▶️ 10years.guix.gnu.org/video/contribu
Inspiring!
#Outreachy #FreeSoftware
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Want to know how best to use #Guix for reproducible research? Here is my recorded talk from Guix' 10th anniversary meeting: 10years.guix.gnu.org/video/guix-as-
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Pjotr Prins, lead of GeneNetwork FOSS team headed up presentations at Tenth Anniversary of GNU Guix:
10years.guix.gnu.org/video/gnu-guix
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Videos from the Guix Birthday Event have just been posted!
Here are the recordings of both my talks:
- 10years.guix.gnu.org/video/how-to-m
- 10years.guix.gnu.org/video/an-intro
Many more interesting and insightful talks to check out there, give them a look!
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📺 Videos of 34 talks from #Guix10Years are available!
▶️ 10years.guix.gnu.org/program/
Lots of great material, from #ReproducibleResearch and #OpenScience to #FreeSoftware hacking, #i18n, outreach, and more.
👍 for doing the heavy lifting!
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read image description
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Crazy news: 'guix system image' can now generate images for WSL!
👉 othacehe.org/wsl-images-for
Yup, that's "WSL" as in "Windows Subsystem for Linux".
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"Guix for development" 👇
dthompson.us/guix-for-devel
David Thompson expands on 'guix shell' usage, including #direnv and #Emacs integration.
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The three levels of reproducibility:
1) Having the source code.
2) Being able to run it.
3) Getting the same results.
is taking care of layer 1. Containers skip 1 and go for 2 and 3. Most package managers ( et al.) go for 2, skipping 1 and downplaying 3.
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Want to understand the differences between source code and binary code and why @GuixHpc is useful for reproducibility?
Checkout @khinsen new blog-post.
Keep in mind that @SWHeritage's mission is to archive all source code, making reproducibility possible. twitter.com/khinsen/status…
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"Hacking anything with #GNU #Guix" 👇
gexp.no/blog/hacking-a
Marius Bakke explains how to set up development environments.
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Reproducible environments with #Guix?
"4 commands and 2 files", explained at #Guix10Years. Couldn't be clearer!
👉 10years.guix.gnu.org/program/#guix-
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La reproductibilité des environnements logiciels pour la recherche avec Sarah Cohen Boulakia et
Écoutez le #podcast complet et les podcasts par sujet de « Libre à vous ! » diffusée sur ▶ libreavous.org/151 🎧
Nous vous souhaitons une bonne écoute
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"Reproducibility and Performance: Why Choose?", published in the new issue of @cisemag, discusses a common dilemma and debunks related myths in #HPC
computer.org/csdl/magazine/
Preprint: hal.inria.fr/hal-03604971/en
#OpenScience #ReproducibleResearch
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#Guix10Years is over! 😢
It's been intense and hopefully enjoyable for all, with participants with diverse backgrounds from research to free software hacking.
Many thanks to the participants & to the sponsors, and happy birthday to the #Guix community!!
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Can't make it in Paris this week?
Good news! #Guix10Years will be live-streamed, starting Friday 16th! 📺
▶️ 10years.guix.gnu.org/live/
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"Reproducibility and Performance: Why Choose?", published in the new issue of , discusses a common dilemma and debunks related myths in #HPC 👇
computer.org/csdl/magazine/
Preprint: hal.inria.fr/hal-03604971/en
#OpenScience #ReproducibleResearch
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📻 Ce mardi 13 à 15h30, l'émission Libre à vous de animée par parlera reproductibilité des environnements logiciels pour la recherche.
👉 libreavous.org
Avec Sarah Cohen-Boulakia et , qui seront aussi vendredi à #Guix10Years !
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#GNU #Guix fête ses 10 ans du 16 au 18 septembre 2022 avec un programme impressionnant: 10years.guix.gnu.org
Vous ne connaissez pas encore GNU Guix? Plus d'excuse 👉 guix.gnu.org/fr/
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Next Friday, Sep. 16th, we're starting with #ReproducibleResearch, #OpenScience, and #HPC talks by scientists and practitioners:
👉 10years.guix.gnu.org/program/#Friday
#Bioinformatics #Nix #Maneage #SoftwareHeritage #Guix
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Happy to announce that talks will be recorded and, if everything works as planned 🤞, live-streamed as well. 📺
Thanks to & the Debian video team for their support!
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We're one week to #Guix10Years!! 🎂
👉 10years.guix.gnu.org/program/
Still a couple days left to register if you'd like to join.
Exciting times!!
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