SimBA uses @DeepLabCut pose-estimation tracking in combination with minimal behavioral annotation to generate supervised machine-learning behavioral predictive classifiers.https://github.com/sgoldenlab/simba …
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SimBA is developed for the analysis of complex social behaviors in rodents, but includes the flexibility to simply generate predictive classifiers across other behavioral modalities with minimal effort and no specialized computational background.pic.twitter.com/RuK3c0dJS9
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Before details, we are happy to thank a number of individuals and labs that have provided support, feedback and assistance:
@RyanMcPickle,@HaydenRWright,@moccalin;@NeirEshel. An especially heartfelt thank you to the@DeepLabCut team for creating an amazing open-source tool.pic.twitter.com/8WW9Sf97OmPrikaži ovu nit -
Why SimBA? Scoring rodent social behavior is manually intensive (understatement), subjective (understatement) and prone to observer drift (still an understatement). If you spend significant time manually scoring videos, SimBA may help automate scoring for you. Whether in mice…pic.twitter.com/4GxlRzkBUW
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So how does SimBA work? SimBA guides you through a 4-step process: (1) video pre-processing, (2) creating or importing a tracking model, (3) generating predictive behavioral classifiers, and (4) analysis and visualization of experimental videos.pic.twitter.com/wCJivahAu3
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Importantly, SimBA incorporates a suite of validation tools that allow (1) allow extensive tweaking and validation of models prior to experimental implementation, and (2) validation tools that provide model explainability and easier access to trouble-shooting following use.pic.twitter.com/wCwMjzOs8x
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We provide detailed documentation of all aspects of the pipeline, as well as common user scenarios. If you are curious, please start with “Scenario 1: From scratch…”https://github.com/sgoldenlab/simba/blob/master/docs/Scenario1.md …
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SimBA is still in active development! Future directions include the ability to analyze mice and rats with similar coat colors, and introduction of close-loop and real-time functions. We would love your input, please join us at https://gitter.im/SimBA-Resource/community … for discussion!
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For fun, here is a link to a SimBA playlist with extended and higher resolution analysis examples.https://www.youtube.com/playlist?list=PLi5Vwf0hhy1R6NDQJ3U28MOUJPfl2YWYl …
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