That being said, if you do want to calculate R(eff), this paper by @dr_anne_cori can show you how to do it and also provides an Excel/R tool which is brillianthttps://academic.oup.com/aje/article/178/9/1505/89262 …
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R is also geographically and demographically dependent
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Interested in other metrics of possible interest: % positivity of tests (if over 2% , is your testing infrastructure enough?) days required to contact trace known positives (is public health capacity ok to trace?), % increase hospital admissions / ICU admissions per day???
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R is also a weird half-baked data analysis language which causes me no end of grief at work.
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What would be better used instead? Hospital admissions? It presumably needs to be something without too much lag.
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