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Prikvačeni tweet
Read the new
@AsifaAkhtar1 Lab paper:#HiC guided#assemblies reveal conserved regulatory#topologies on#Xchromosome and autosomes despite extensive#genome shuffling in@GenesDev .
Description in the comments below
http://genesdev.cshlp.org/content/early/2019/10/09/gad.328971.119 …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
#Reproducible articles introduced by@eLife. I hope this will become the norm in the next 10 years. This would improve#Bioinformatics papers SO MUCH and help meeting@GOFAIRofficial requirements.#Science#research#sciencetwitter#FAIRdatahttps://elifesciences.org/labs/ad58f08d/introducing-elife-s-first-computationally-reproducible-article …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
As
@tangming2005 outlined in his tweet there's also https://github.com/slowkow/homerkit … to parse HOMER motifs output. Really handy. I quitted using HOMER a while ago notably because of the pain of parsing the outputs.Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
"marge" a R interface for "HOMER". Identify those motifs you like dearly and parse them easily within R with your favorite motif caller. REALLY nice!https://twitter.com/tangming2005/status/1221877635942248449 …
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Gautier Richard proslijedio/la je Tweet
#reformedesretraites retraite à 65 ans ancien système : 3089 euros net/mois retraite à 65 ans nouveau système : 2553 euros net/mois un grand merci à@clairemmathieu pour le partage des ses données et réflexions 2/2pic.twitter.com/zu6J4rlGnp
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Gautier Richard proslijedio/la je Tweet
Our bioinformatics guy said the same in this debunking of the paper:https://theprepared.com/blog/no-the-2019-ncov-genome-doesnt-actually-seem-engineered-from-hiv/ …
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Gautier Richard proslijedio/la je Tweet
And yet targeted methylation and demethylation assays can have sustained impacts on transcription level. Causality can be in both directions.https://pubmed.ncbi.nlm.nih.gov/31724704-harnessing-targeted-dna-methylation-and-demethylation-using-dcas9/ …
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Gautier Richard proslijedio/la je Tweet
First the chromatin opens, then the DNA methylation is lost. The chromatin opens because transcription factors (TFs) target those loci. TFs tell DNA methylation and nucleosomes what to do at cis-regulatory loci. Not the other way around. Your textbook needs a rewrite.https://twitter.com/molecularcell/status/1222548588930011137 …
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Gautier Richard proslijedio/la je Tweet
Il y a 20 ans, la recherche sur les
#coronavirus était un 'sous-domaine' peu financé de la virologie. La recherche fondamentale est "inutile" jusqu'à ce qu'elle devienne soudainement la chose la plus importante au monde. Imaginez si elle n'était plus du tout financée.....Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
The main trick I learned from those slideshttps://twitter.com/dhmontgomery/status/1223009840580255746 …
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Few tips and tricks for better plots! Check those slides ASAP: https://www.williamrchase.com/slides/assets/player/KeynoteDHTMLPlayer.html#0 … . Kudos to
@W_R_Chasehttps://twitter.com/W_R_Chase/status/1222988235166470144 …
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Gautier Richard proslijedio/la je Tweet
New Marchantia genome reassembly starring H3K27me3! Thanks to everyone who helped bring this together! Website with chromatin profiles, updated gene names: http://marchantia.info/
#FirstPaper#FirstTweet#NotTheLastPaperhttps://www.cell.com/current-biology/fulltext/S0960-9822(19)31610-0#.XjMQM61WqeI.twitter …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Hi
@higlass_io people. I was doing comparative#genomics the other day and was day dreaming: will HiGlass support#genome vs genome alignment matrices and their respective annotation plotting? One genome on the X, another one on the Y and the rearrangements in the central panel?Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
HiGlass in Jupyter Notebooks
! It's a great tool to visualize any genomic data interactively, but the main focus is on Hi-C matrices exploration.https://twitter.com/higlass_io/status/1222570098105319424 …
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Gautier Richard proslijedio/la je Tweet
#rstudioconf is basically the Christmas morning of finding out about new#rstats packages.
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Gautier Richard proslijedio/la je Tweet
I’m thrilled to announce the publication of the quantitive proteomic profiling of the Cancer Cell Line Encyclopedia. The
@GygiLab in collaboration with colleagues at Novartis and the Broad we measured the proteomes of 375 cell lines from various tumor lineages (1/13)pic.twitter.com/WXgsODMzFs
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I was discussing this with my brother who is a
#Python person. The#Rstats community is awesome and is pushing people to not constantly reinvent the wheel! Also, what a pleasure to stumble upon a package that does more than what you were dreaming about. {UpSetR} comes to mind.https://twitter.com/alexkgold/status/1222620210416377856 …
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Gautier Richard proslijedio/la je Tweet
The Pacific Ocean is so acidic that it's dissolving Dungeness crabs' shellshttps://www.cnn.ph/world/2020/1/28/pacific-ocean-more-acidic-.html …
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Gautier Richard proslijedio/la je Tweet
Examination of DNA methylation across arthropods from
@PSarkies . Some interesting findings: 1) more nuanced view of DNMT and ALK enzyme co-evolution 2)conservation of nucleosome positioning and DNAme 3) Body methylation = still confusing.



https://www.biorxiv.org/content/10.1101/2020.01.27.920108v1 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Gautier Richard proslijedio/la je Tweet
Pleased to announce that
#tidybayes v2.0 (SLABS FOR DAYS edition) hit CRAN today.#rstats Lots of new stuff in this version: A THREADPrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Gautier Richard proslijedio/la je Tweet
Michelangelo
#Hi-C by an inspired @leonidmirny today at the @CRGenomica! https://www.crg.eu/en/event/cellviewer-international-symposium-seeing-and-decoding-nuclear-function-and-structure …pic.twitter.com/w5egRZNXjU
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Big new higlass-python release out last weekend! Create overlay and dataset ratio tracks directly in a