Can you comment on the quality of the MGISEQ2000 vs Illumina? What’s the best place to find a detailed comparison?
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Very comparable data quality for WGS with PCR. Slightly better indel calling for WGS PCR free. Fall a little bit short on calling SNP FN, but the difference is marginal. A lot of publications on BGISEQ-500, which is essentially the same sequencing chemistry. Worth a try :)
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