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Chiachun Chiu proslijedio/la je Tweet
New paper from PhD student Andreas Halman evaluating short tandem repeat genotyping tools in exome data. https://www.biorxiv.org/content/10.1101/2020.02.03.933002v1 … Constructive comments and criticisms welcome.
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Chiachun Chiu proslijedio/la je Tweet
Graphs are fundamental to scientific/technical software projects. Here's my take on working with graphs in Rust today.https://depth-first.com/articles/2020/02/03/graphs-in-rust-an-introduction-to-petgraph/ …
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Chiachun Chiu proslijedio/la je Tweet
Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes. Pre-print paper at BioRxiv -https://www.biorxiv.org/content/10.1101/2020.01.31.928796v1 …
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Chiachun Chiu proslijedio/la je Tweet
The identification and characterization of a novel coronavirus associated with the recent outbreak of respiratory illness in China reveals similarities with SARS coronaviruses, according to a study published in Nature.https://go.nature.com/2OovmR7
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Chiachun Chiu proslijedio/la je Tweet
Potential applications of nanopore sequencing for forensic analysis. http://dlvr.it/RPHFg1
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Chiachun Chiu proslijedio/la je Tweet
Siadjeu et al. providing insights into the yam genome using
@nanopore reads. The assembly consisted of 35,269 protein-encoding genes with a total length of 485 Mbp. bioRxiv viewerhttp://disq.us/t/3ltb8axHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Chiachun Chiu proslijedio/la je Tweet
New job: Bioinformatician in Computational Functional Genomics @ New South Waleshttps://www.abacbs.org/jobs-detailed/2020/2/2/bioinformatician-in-computational-functional-genomics-new-south-wales …
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Chiachun Chiu proslijedio/la je Tweet
ctDNAtools: An R package to work with sequencing data of circulating tumor DNA https://biorxiv.org/cgi/content/short/2020.01.27.912790v1 …
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Chiachun Chiu proslijedio/la je Tweet
Our
#openaccess paper describing the JASS (http://jass.pasteur.fr/index.html ) tool suite to perform#multivariate#GWAS is out in NAR Genomics and Bioinformatics!https://academic.oup.com/nargab/article/doi/10.1093/nargab/lqaa003/5715214?guestAccessKey=7dccd7db-c56e-4e5d-a2f8-f9d2f4d9e710 …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Chiachun Chiu proslijedio/la je Tweet
Bioconductor is hiring for a full-time position on the Bioconductor Core Team! The minimum requirement is a Master's degree in an appropriate field (Computer Programming, Bioinformatics, Biological Science, etc) with some programming background. Apply:https://www.roswellpark.org/careers/research/hri-scientist-7283 …
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Chiachun Chiu proslijedio/la je Tweet
BlobToolKit – Interactive quality assessment of genome assemblies https://www.biorxiv.org/content/10.1101/844852v1 … https://blobtoolkit.genomehubs.org/view pic.twitter.com/DgeJdXCWEq
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Chiachun Chiu proslijedio/la je Tweet
Check out how to use natural language processing approaches for document classification to analyze
#metagenomic sequences; a preprint co-authored by EVBC member Ali Elbehery.https://www.biorxiv.org/content/10.1101/2020.01.10.892158v1 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Chiachun Chiu proslijedio/la je Tweet
An approach to integrating exome sequencing for fetal structural anomalies into clinical practice. http://dlvr.it/RNkp5j
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Chiachun Chiu proslijedio/la je Tweet
BlastFrost: Fast querying of 100,000s of bacterial genomes in Bifrost graphs https://biorxiv.org/cgi/content/short/2020.01.21.914168v1 …
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Chiachun Chiu proslijedio/la je Tweet
I just published Efficient Querying on Genomic Region Tableshttps://link.medium.com/ZxTuZybqt3
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Chiachun Chiu proslijedio/la je Tweet
Performance difference of graph-based and alignment-based hybrid error correction methods for error-prone long reads | Genome Biology https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1885-y …
#bioinformaticspic.twitter.com/bBZkT6IvaZ
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Chiachun Chiu proslijedio/la je Tweet
deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index | Genome Biology https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1895-9 … https://github.com/hitbc/deSALT
#bioinformaticspic.twitter.com/vSVV5w496d
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Chiachun Chiu proslijedio/la je Tweet
The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances https://www.biorxiv.org/content/10.1101/527515v3 …https://github.com/burkhard-morgenstern/Slope-SpaM …
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Chiachun Chiu proslijedio/la je Tweet
Rust packs a lot of power into an appealing package. But it's blank slate when it comes to cheminformatics software.https://depth-first.com/articles/2020/01/20/cheminformatics-in-rust/ …
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Chiachun Chiu proslijedio/la je Tweet
UNAGI: an automated pipeline for nanopore full-length cDNA sequencing uncovers novel transcripts and isoforms in yeast. http://dlvr.it/RNNhMB
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