There is great concern about the potential spread of the new #SARSCoV2 variant (B.1.1.7) outside the UK. How many cases do we have to expect in Switzerland and will they spread further? Let's do some back-of-the-envelope calculations. 1/nhttps://www.ecdc.europa.eu/en/publications-data/threat-assessment-brief-rapid-increase-sars-cov-2-variant-united-kingdom …
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Around 10,000 British visitors have arrived in Switzerland since December 14. Many of them are visiting Switzerland for their ski holidays. 2/nhttps://www.tagesanzeiger.ch/auf-der-suche-nach-10000-briten-602816416848 …
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The Real-time Assessment of Community Transmission (REACT) programme estimated
#SARSCoV2 RT-PCR swab-positivity (prevalence) in the UK during early December at around 1%. That would correspond to around 100 positive cases among the British visitors. 3/nhttps://www.imperial.ac.uk/medicine/research-and-impact/groups/react-study/real-time-assessment-of-community-transmission-findings/ …1 odpowiedź 7 podanych dalej 57 polubionychPokaż ten wątek -
Assuming that around half of those cases are infectious and another half carry the new variant, there could be around 25 cases with the new variant in Switzerland. What is the probability that they establish a sustained transmission chain in Switzerland? 4/n
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Using branching process models, we can calculate this probability as P = 1 - 1/Re^n where Re is the effective reproduction number and n is the number of initial cases. 5/npic.twitter.com/3JTSlMWGPM
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The effective reproduction number in Switzerland is arguably slightly above 1 at the moment. For Re = 1.05, we obtain a probability of 70% that the new variant will spread in Switzerland. For Re = 1.1, the probability would be 91%. 6/n https://sciencetaskforce.ch/epidemiologische-lagebeurteilung-21-dezember-2020/ …
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But there is more to it. The equation above assumes that the number of secondary cases are geometrically distributed (k = 1). However,
#SARSCoV2 exhibits superspreading and the number of secondary cases is highly overdispersed (k ~ 0.5). 7/n https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2020.25.4.2000058 …3 odpowiedzi 4 podane dalej 59 polubionychPokaż ten wątek -
That means that many infected cases do not transmit at all, and only a few infected individuals have the potential to initiate a sustained transmission chain. 8/n
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Assuming k = 0.5, we obtain a probability of 58% (for Re = 1.05) and 79% (for Re = 1.1) that the 25 cases will initiate a sustained transmission chain in Switzerland. 9/n
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W odpowiedzi do @C_Althaus
Is there a simple closed form expression for P for a given k, Re and n?
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Not that I know of.
Wydaje się, że ładowanie zajmuje dużo czasu.
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