Bortz_Virology_Group

@BortzGroup

Virus genomics research lab at the University of Alaska (PI: Eric Bortz, PhD)

@uaaanchorage
Vrijeme pridruživanja: lipanj 2019.

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  1. Prikvačeni tweet
    23. srp 2019.

    UAA and UAF Biology and collaborators in Ukraine: sequencing the genome of virulent African swine fever virus (ASFV) by MinION

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  2. proslijedio/la je Tweet
    prije 1 sat

    First genome sequenced using the ARTIC protocol and primer scheme by is up on . Sequenced by the Hangzhou CDC with assistance from .

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  3. 3. velj

    Dear can you create a “Like Your Thinking” or “Good Point” button other than a little heart? We want to have scientific discussions but not “heart” serious case reports and posts about . We but not suffering viruses can cause. Just imho. Gracias.

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  4. proslijedio/la je Tweet
    31. sij

    I did some math surrounding the number of mutations between two genomes and the distribution of the number of transmission steps that separate them. 1/9

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  5. proslijedio/la je Tweet
    31. sij

    New anti-HIV antibody overcomes common resistance mutations, suppresses virus in mice as mono-therapy. Includes mutational antigenic profiling by in our group to map paucity of viral escape mutations relative to other VRC01-class antibodies:

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  6. proslijedio/la je Tweet
    28. sij

    Thanks to rapid and open data sharing by and through GISAID, we have additional genomes from one case in Taiwan and two cases in California. Latest data and analysis is up at . 1/4

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  7. proslijedio/la je Tweet
    27. sij

    Our metabolomics collaboration on copper and liver disease with Valérie Copié's group is out in JNB:

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  8. proslijedio/la je Tweet
    27. sij
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  9. proslijedio/la je Tweet
    27. sij

    Discrete was used by partner IZSVe to study the 2017 in Italy. Cryptic wild bird-mediated transmission was inferred, potentially detecting incursions across the wildlife–domestic interface.

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  10. proslijedio/la je Tweet
    25. sij

    Extensive new open access articles on . Manuscript describing rapid 31Dec investigation by China CDC includes use of sequencing to characterise the virus. We continue to support public health labs in this response: contact here

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  11. 24. sij
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  12. proslijedio/la je Tweet
    24. sij

    ARTIC have developed a set of lab and bioinformatics protocols for the nCoV-2019 virus using a targeted multiplex primer scheme. This package enables direct sequencing and real-time analysis with RAMPART of the coronavirus on nanopore sequencers:

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  13. proslijedio/la je Tweet
    23. sij

    Data in paper by Zhou et al from Wuhan, describing the initial characterisation of the nCoV, showing also that deeper resp tract samples have higher viral load that oral/throat swabs.

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  14. 23. sij

    Genome amplification primers and bioinformatics for rapid genotyping studies of 2019-nCoV novel coronavirus, using

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  15. 23. sij

    Preliminary data from M Letko and Vincent Munster at NIH, 2019-nCoV spike S receptor binding domain binds and enters cells expressing ACE2 similar to SARS-CoV.

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  16. proslijedio/la je Tweet
    22. sij

    . Poultry: 30 Dec – 4 Jan, Poland; 9 – 10 Jan, Hungary; 9 Jan, Slovakia; 13 - 16 Jan, Romania; 17 Jan, Czech Republic; 18 Jan, Ukraine (H5NX). Wild birds: 20 Jan, Germany, greater white-fronted goose (Anser albifrons). Via & .

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  17. proslijedio/la je Tweet
    22. sij

    We are sharing our initial analysis of the new (with ): ’s relationship to bat coronaviruses & recombination signals. Full analysis is here on virological:

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  18. 22. sij

    in Alaska on a changing Arctic frontier, with international scope, in a lab where you’ll also be on the frontier of genomics! Postdoctoral with

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  19. proslijedio/la je Tweet

    I have posted some preliminary thoughts and findings on the nCoV2019 genome sequences that were available up until 2020-01-19. This is not intended as a publication nor will it become one.

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  20. proslijedio/la je Tweet
    12. sij

    Thanks to rapid and open data sharing by China CDC, Wuhan Institute of Virology, Institute of Pathogen Biology and Fudan University, we know genomes from 6 of the novel coronaviruses isolated in Wuhan. I've posted a tree of these viruses here: 1/4

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  21. 11. sij

    Ever wake up one beautiful Saturday morning in Alaska and fully realize you have way more sequence data, on more novel pathogens, than you have grad students and postdocs in your group to analyze? Interested? DM or email me (ebortz@Alaska.edu)

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