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John Bogovic proslijedio/la je Tweet
#ZIDAS2020, apply and retweet now! (http://2020.zidas.org )https://twitter.com/LeBIOP/status/1224329093119926272 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
John Bogovic proslijedio/la je Tweet
We’re looking for a PhD student to work on Deep Learning from Sparse Annotations for Cell Segmentation in the HEIBRiDS grad school in Berlin (application deadline Feb 7): https://www.heibrids.berlin/admission/
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John Bogovic proslijedio/la je Tweet
Today, in collaboration with
@HHMIJanelia, we are releasing the “hemibrain” connectome, a detailed map of neuronal connectivity of roughly half of a fruit fly brain, plus tools for visualization and analysis. Learn more at https://goo.gle/30IroaG .https://youtu.be/4lVOWoKF5GwHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
John Bogovic proslijedio/la je Tweet
Proud to introduce
@janeliaflyem "hemibrain"#hemibrain: a connectome of the Drosophila central brain. https://www.biorxiv.org/content/10.1101/2020.01.21.911859v1 ….@stardazed0@michalj Please see overview website: https://www.janelia.org/project-team/flyem/hemibrain … Play with data on neuPrint: https://neuprint.janelia.org/Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
John Bogovic proslijedio/la je Tweet
Presenting: The most detailed map yet of the fruit fly brain. Janelia’s FlyEM team has traced the paths of some 25,000 neurons in the fruit fly brain and pinpointed the places where they connect. Now, all the data is available online for free. https://www.janelia.org/news/unveiling-the-biggest-and-most-detailed-map-of-the-fly-brain-yet …
#hemibrainpic.twitter.com/u7WyU6nK06Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
John Bogovic proslijedio/la je Tweet
“PigeonBots,” how machine learning is improving our understanding of Paleozoic biodiversity, and grabbing a freeze-frame of whole cells. Check out what’s new this week in Science: https://fcld.ly/y1yd91x pic.twitter.com/C76s4aahxF
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John Bogovic proslijedio/la je TweetHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi
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VNC template ftw (Hooray it's useful)!!
#registrationhttps://twitter.com/darbly/status/1217266848678522881 …
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John Bogovic proslijedio/la je Tweet
New
@biorxivpreprint on synapse-resolution reconstruction of motor control circuits in the Drosophila ventral nerve cord (VNC) led by@jasper_tms,@davidhildebrand, and Brett Graham. A great collaboration with the labs of@casa_tuthill &@janfunkey. 1/n https://www.biorxiv.org/content/10.1101/2020.01.10.902478v1 …pic.twitter.com/EDOPnvPKUR
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John Bogovic proslijedio/la je Tweet
How's about Glagolitic in math formulas? I think the world is in a desperate need of Glagolitic in math formulas!pic.twitter.com/ENtSCUajbo
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John Bogovic proslijedio/la je Tweet
Update to our Drosophila brain template study https://www.biorxiv.org/content/10.1101/376384v2 … by
@BogovicJohn et al. includes updated parameters for a 10x registration speedup with elastix, a new general purpose compressed transformation format and software to apply and convert transformations.Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
John Bogovic proslijedio/la je Tweet
Automatic prediction of synaptic links in a whole Drosophila brain: Read about
@julia_buhmann's method in our preprint, result of a fruit(fly)ful collaboration with the labs of@ddavi,@gsxej,@herrsaalfeld, and@darbly!#connectomics#machinelearning https://www.biorxiv.org/content/10.1101/2019.12.12.874172v1 …pic.twitter.com/9Igu4oNIUA
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John Bogovic proslijedio/la je Tweet
Finally got this to work!!

Using the FIJI plugins BIOP & BigWarp, and a groovy script... I morphed an Allen brain atlas .SVG onto an immuno (originally a .VSI image) and converted the regions to ROIs. Here's a video of the result
Thanks @BogovicJohn@nKiaru@MCMPcorepic.twitter.com/4VTfLp0EMaHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
John Bogovic proslijedio/la je Tweet
Congratulations
Dr @hanslovsky! You're the best! And 1000 thanks to@ThorstenBeier et al. for the local support, you're also the best!pic.twitter.com/T9xQYliHs7
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Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi
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John Bogovic proslijedio/la je Tweet
#SeeingIsBelieving#eesimaging@avweigel's absolutely fantastic talk on organelle segmentation, and automated CLEM registration, w/ breathtaking images of polysomes bound to the ER.@EMBLEvents@davisvbennett@neptunes5thmoon@herrsaalfeldpic.twitter.com/5reNZhvH1G
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John Bogovic proslijedio/la je Tweet
So, this is
#N5-Zarr https://github.com/saalfeldlab/n5-zarr …, my attempt to support the#Zarr format https://zarr.readthedocs.io/en/stable/spec/v2.html# … in#Java. You can now work with Zarr containers via the N5 API, e.g. access arrays with#ImgLib2, build hierarchies and develop your own metadata. WIP, some bugs expected.Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
John Bogovic proslijedio/la je Tweet
5 years of work and a huge amount of effort from every one involved, particularly Gleb: https://www.biorxiv.org/content/10.1101/773986v1 …. Definitely work that could only be done at
@HHMIJanelia.pic.twitter.com/rl6TuMWxaJ
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John Bogovic proslijedio/la je Tweet
There are some very impressive figures in this preprint. Correlative three-dimensional super-resolution and block face electron microscopy of whole vitreously frozen cells. Link: https://www.biorxiv.org/content/10.1101/773986v1 … https://twitter.com/biorxivpreprint/status/1174568264720179200 …pic.twitter.com/fdr6Fe8fkJ
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John Bogovic proslijedio/la je Tweet
Research engineer role for machine learning in bio-med image processing has come up
@institut_curie. Please consider applying/spread the word@DaryaChyzhyk@bercowskya@BogovicJohn@SnakeEyeJohnson@bellonet@LaineBioImaging@florianjug@cazencott@DrAnneCarpenter@albertcardonapic.twitter.com/PylCZj7jkSOvo je potencijalno osjetljiv multimedijski sadržaj. Saznajte više
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