Abhi Nellore

@AbhiNellore

Comp bio prof specializing in reanalysis of public genomics data with primary applications in cancer immunotherapy and early cancer detection.

Portland, OR
Vrijeme pridruživanja: siječanj 2012.
Rođen/a 1984.

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  1. Prikvačeni tweet
    30. sij

    1/7 Congrats to , , my co-conspirator and especially the 🌟 of the show for making the very first research paper in 's new subjournal NAR Cancer happen!

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  2. proslijedio/la je Tweet
    4. velj

    Pretty awesome that we already have a ton of genomic data on 2019-nCoV (Wuhan novel coronavirus), with something like 35 studies already published exploring the origins and nature of the virus. Modern medicine and public health in action!

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  3. proslijedio/la je Tweet

    I love conferences like where I can catch up with friends and former co-workers like I highlighted in my past 2 tweets But I also enjoy meeting new people. I'll highlight some of them below so you can meet them too ^^ Apologies to those not mentioned👇🏾 1/11

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  4. 30. sij

    7/7 Finally, some cancer-specific junctions are found in developmentally associated samples!

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  5. 30. sij

    6/7 We further found that many cancer-specific junctions in neither core normals nor selected SRA noncancer samples recur across TCGA cases and cancer types.

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  6. 30. sij

    5/7 We found that after removing exon-exon junctions in GTEx and TCGA tissue-matched normal samples from consideration, 80% of junctions across TCGA were still found in other normal GTEx tissues.

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  7. 30. sij

    4/7 For insight, we looked at various degrees of exon-exon junction novelty: 1) junctions not in GTEx or TCGA tissue-matched normal samples 2) junctions not in any GTEx or TCGA normal ("core normal") samples 3) junctions in neither core normals nor selected SRA noncancer samples.

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  8. 30. sij

    3/7 When are exon-exon junctions detected in TCGA cancer samples cancer-specific?

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  9. 30. sij

    2/7 Our study probes cancer-specific exon-exon junctions using archived human RNA-seq data spanning TCGA, GTEx and selected noncancer samples from SRA.

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  10. proslijedio/la je Tweet
    9. sij

    It has been a supreme pleasure working with & his group on ASCOT, now in . Congrats to , , , Rone Charles and others who contributed methods, expertise & software (like & )

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  11. 6. sij
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  12. 1. sij

    Goodbye, decades with awkward names!

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  13. proslijedio/la je Tweet
    22. pro 2019.

    These moral issues around cloud computing deserve more attention. I would guess they apply to the Google and Microsoft clouds as well. And what about those large government contracts for cloud usage that are becoming more common?

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  14. proslijedio/la je Tweet
    21. pro 2019.

    Great work, and Ravi 🙂! SW here: . Provides much needed insight into heuristics. Also thanks to & for access to big Skylake & KNL resources.

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  15. proslijedio/la je Tweet

    This is what I hope the candidates will be debating tonight.

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  16. proslijedio/la je Tweet
    4. pro 2019.

    By -- congrats, Daniel! Here come more links. SW: , brief video describing ideas/results: , sketching library: . Install from Bioconda: `conda install dashing`

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  17. proslijedio/la je Tweet
    19. stu 2019.

    Thanks to these emerging leaders in for forming today’s panel on Challenges & Opportunities in Epigenetic Studies , and to ’s SinéadAherne for organising everything

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  18. 14. stu 2019.

    This should be fun! Will be discussing ’s work (also with ) so far reanalyzing ~35k HM450K array samples on GEO. Ask us q’s about working with publicly available data!

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  19. 8. stu 2019.

    Hawk on east side of Steel Bridge!

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  20. proslijedio/la je Tweet
    29. lis 2019.
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