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Prikvačeni tweet
Very proud of this paper - 100% of authors are from Bioinformatics Institute! Our dig at UK Biobank GWAS dataset in an attempt to characterize pleiotropy and find interesting functional insights.https://www.nature.com/articles/s41598-020-58040-4 …
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Alex Predeus proslijedio/la je Tweet
Asked to write a chapter about RNA-seq counts modeling, I used
#rstats bookdown to put all the material online. Includes some new workflow pieces like tximeta for import and swish for transcript level:http://mikelove.github.io/counts-modelHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Alex Predeus proslijedio/la je Tweet
This is a fascinating read for anyone interested in bacteria: One or two membranes? Diderm Firmicutes challenge the Gram-positive/Gram-negative dividehttps://onlinelibrary.wiley.com/doi/epdf/10.1111/mmi.14469 …
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Alex Predeus proslijedio/la je Tweet
Widespread divergent transcription from prokaryotic promoters http://disq.us/t/3lthooe New preprint from the lab with
@wade_lab ... big congrats@emilywarmanj and@fozzz21 ...dare I say worth a look for anyone working on a prokaryote or in the area of transcription.pic.twitter.com/JHm0JVjruG
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Alex Predeus proslijedio/la je Tweet
Many biologists are interested in how well RNA and protein expression correlate. We confirmed that they have middling correlation on average (~0.5). But the scope of these data let us ask this on a per-gene level across many tissue lineages. (3/13)pic.twitter.com/pwVkp7qU8Q
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Alex Predeus proslijedio/la je Tweet
I’m beyond excited to see our
@NatureComms paper out! ‘Inhibiting bacterial cooperation is an evolutionarily robust anti-biofilm strategy’ Based on imidazole EPS inhibitors I started developing in 2008 and an inspiring research stay with Kevin Fosterhttps://www.nature.com/articles/s41467-019-13660-x …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Alex Predeus proslijedio/la je Tweet
What's wrong with computational notebooks
http://web.eecs.utk.edu/~azh/blog/notebookpainpoints.html …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Alex Predeus proslijedio/la je Tweet
We wrote the review that I wished I'd had when I started my PhD in gene regulation & genomics! Read for our take on the past 40 yrs of enhancer biology, a def of an "enhancer", and how we think modern tech (like CRISPR screens) will enable the next era of understanding the genomehttps://twitter.com/NatureRevGenet/status/1222103381306675200 …
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Alex Predeus proslijedio/la je Tweet
I am very happy to present BlastFrost! BlastFrost allows to query large collections of bacterial genome assemblies for sequences of interest, building on the Bifrost colored+compacted de Bruijn graph library by
@GuillaumOleSan 1/nhttps://twitter.com/biorxivpreprint/status/1220319526363058177 …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Alex Predeus proslijedio/la je Tweet
New paper for the new year! It compares different long-read assemblers for microbial genome assembly: https://f1000research.com/articles/8-2138/ … Two Twitter threads follow - one about the paper itself and one about my experience with
@F1000Research. (1/n)Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
One of the few abstracts that got me going "wtf did I just read"?https://twitter.com/hitenmadhani/status/1217853408033460226 …
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Alex Predeus proslijedio/la je Tweet
@APredeus is talking about bacterial GWAS on Salmonella genomes at@northernbugpic.twitter.com/t98Hx5OlNr – mjesto: University of Leeds
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We developed a new method to find functional enrichments in GWAS data, named LSEA, detailed here: https://github.com/bioinf/ukb_phewas/tree/master/LSEA … A key biological finding is how much observed pleoiotropy is in matrisome and matrisome regulators!
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Alex Predeus proslijedio/la je Tweet
Let's (almost losslessly) project pangenome graphs into BED and FASTA and then query them with bedtools! https://github.com/vgteam/odgi/pull/67 … cc
@aaronquinlan@lh3lh3@BenedictPaten@jeizengaHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Alex Predeus proslijedio/la je Tweet
We have isolated and described another member of the mysterious Holospora-like bacteria -- candidatus Gortzia. Next step -- full genome. This was my first experience with
@bioRxiv preprint. I liked it very much -- wish paper review was this fast!#holospora#gortziahttps://twitter.com/biorxivpreprint/status/1216745858210959360 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Alex Predeus proslijedio/la je Tweet
Function of new microRNAs identified in Salmonella and Shigella infections, which modulate host cell biology to counteract the pathogen’s intracellular lifestyle. | Nature Microbiologyhttps://www.nature.com/articles/s41564-019-0614-3#Fig2 …
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Alex Predeus proslijedio/la je Tweet
Ever wondered who is to blame for all the gaps in your genome assembly? Our
@biorxivpreprint led by@valentina_peona evaluates what's been previously hiding in gaps and how sequencing technologies succeed/struggle with repeat/GC-rich regions. https://www.biorxiv.org/content/10.1101/2019.12.19.882399v1 …#transposonpic.twitter.com/tz5dJUv39g
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Alex Predeus proslijedio/la je Tweet
I am super happy to share our latest foray into the genetic architecture of complex traits! This was a project headed by Kevin-I-can't-believe-you-are-still-not-on-Twitter-Hartman, Sara Rashkin, and
@johnwitte, and was a VERY long time in the making!https://twitter.com/biorxiv_genomic/status/1207693272333856769 …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Alex Predeus proslijedio/la je Tweet
Nice one from Jost Enninga: Dynamic Growth and Shrinkage of the Salmonella-Containing Vacuole Determines the Intracellular Pathogen Nichehttps://www.cell.com/cell-reports/fulltext/S2211-1247(19)31531-1?dgcid=raven_jbs_etoc_email#.Xfk3tjyEBaM.twitter …
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Alex Predeus proslijedio/la je Tweet
Single cell TNSeq in bacteria gonna change the game y’allhttps://www.nature.com/articles/s41467-019-13719-9 …
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