SUPERFAMILY
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Annotation loaded for draft Cassava sequence Tip of the hat to @
10:41 AM Nov 17th
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UniProt describe their approach to complete proteomes Proteomes for 1,428 organisms (includes viruses)
5:20 AM Nov 4th
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Further improvements to search: added stopwords, paging corrections and removed duplicate results Result ranking needs further work
7:07 AM Oct 30th
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Added another 7 eukaryotic genomes Including sequences for 2 Penicillium species from @
6:06 AM Oct 22nd
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Added domain assignments for pig (Sus scrofa) bit.ly/WKueL and marmoset (Callithrix jacchus) genomes from Ensembl
2:39 AM Oct 20th
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Added over 150 bacterial genomes from NCBI More than 1,200 organisms in SUPERFAMILY Pig and Marmoset comming soon
8:37 AM Oct 15th
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Made quality & speed improvments to search function Better results presentation & MySQL FULLTEXT indexes coming soon
4:59 AM Sep 18th
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Added two sets of tab menus: genome centric (E coli K12) and SCOP centric (Zn fingers)
4:42 AM Sep 8th
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Assignments for Spizellomyces punctatus Second Chytrid genome Sequences from Broad Institute
7:26 AM Aug 26th
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Annotation for single celled Ichthyosporea, Capsaspora owczarzaki, Proteins from Broad Institute
3:00 AM Aug 25th
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Added far future expires for static images on web site after checking out some pages with AOL web page test
7:11 AM Aug 10th
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Addition of web site breadcrumbs clarified site structure Working on tab menus now to highlight accessilble pages and improve explorability
5:24 AM Jul 31st
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Added assignments for Wallaby genome from
10:30 AM Jul 22nd
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Added missing genome browser links for Alternaria brassicicola and Schistosoma mansoni Is there a browser for pea aphid yet?
6:48 AM Jul 8th
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Loaded annotation for new jelly fungus genome Tremella mesenterica from JGI
10:11 AM Jul 6th
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Updated Arabidopsis thaliana genome Release announcement from TAIR
11:31 AM Jul 3rd
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Made the genome and superfamily searches live on the compare genomes page Hope this improves web site usability
6:55 AM Jun 29th
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Adding genome name and superfamily description autocomplete searches to the compare genomes page Will make live next week
3:24 AM Jun 20th
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Using some of the maatkit tools to find and fix slow SQL on the web site
7:59 AM Jun 11th
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Loaded annotation for Hydra magnipapillata which is a fresh water animal that may age very slowly
4:09 AM Jun 8th
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- Name SUPERFAMILY
- Location England: Cambridge & Bristol
- Web http://supfam.org/
- Bio SUPERFAMILY is a database of structural and functional protein annotations for all completely sequenced organisms.
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