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SUPERFAMILY

  1. UniProt describe their approach to complete proteomes http://bit.ly/4AApIR Proteomes for 1,428 organisms (includes viruses)5:20 AM Nov 4th from web
  2. Further improvements to search: added stopwords, paging corrections and removed duplicate results Result ranking needs further work7:07 AM Oct 30th from web
  3. Added another 7 eukaryotic genomes http://bit.ly/3skQkr Including sequences for 2 Penicillium species from @fungalgenomes6:06 AM Oct 22nd from web
  4. Added domain assignments for pig (Sus scrofa) bit.ly/WKueL and marmoset (Callithrix jacchus) http://bit.ly/22t75h genomes from Ensembl2:39 AM Oct 20th from web
  5. Added over 150 bacterial genomes from NCBI More than 1,200 organisms in SUPERFAMILY http://bit.ly/3N94yS Pig and Marmoset comming soon8:37 AM Oct 15th from web
  6. Made quality & speed improvments to search function http://bit.ly/1DMdL6 Better results presentation & MySQL FULLTEXT indexes coming soon4:59 AM Sep 18th from web
  7. Added two sets of tab menus: genome centric (E coli K12) http://bit.ly/pOejb and SCOP centric (Zn fingers) http://bit.ly/2LPwyC4:42 AM Sep 8th from web
  8. Assignments for Spizellomyces punctatus http://bit.ly/2mTxKV Second Chytrid genome Sequences from Broad Institute http://bit.ly/gYFro7:26 AM Aug 26th from web
  9. Annotation for single celled Ichthyosporea, Capsaspora owczarzaki, http://bit.ly/EHF1i Proteins from Broad Institute http://bit.ly/gYFro3:00 AM Aug 25th from web
  10. Added far future expires for static images on web site after checking out some pages with AOL web page test http://www.webpagetest.org/7:11 AM Aug 10th from web
  11. Addition of web site breadcrumbs clarified site structure Working on tab menus now to highlight accessilble pages and improve explorability5:24 AM Jul 31st from web
  12. Added assignments for Wallaby genome http://bit.ly/M6HJX from http://www.ensembl.org/10:30 AM Jul 22nd from web
  13. Added missing genome browser links for Alternaria brassicicola and Schistosoma mansoni Is there a browser for pea aphid yet?6:48 AM Jul 8th from web
  14. Loaded annotation for new jelly fungus genome Tremella mesenterica http://bit.ly/Kg0Ua from JGI http://bit.ly/16Utbm10:11 AM Jul 6th from web
  15. Updated Arabidopsis thaliana genome http://bit.ly/NXXDu Release announcement from TAIR http://www.arabidopsis.org/...11:31 AM Jul 3rd from web
  16. Made the genome and superfamily searches live on the compare genomes page http://bit.ly/hoSGU Hope this improves web site usability6:55 AM Jun 29th from web
  17. Adding genome name and superfamily description autocomplete searches to the compare genomes page Will make live next week3:24 AM Jun 20th from web
  18. Using some of the maatkit tools http://www.maatkit.org/ to find and fix slow SQL on the web site7:59 AM Jun 11th from web
  19. Loaded annotation for Hydra magnipapillata http://bit.ly/d2JKG which is a fresh water animal that may age very slowly4:09 AM Jun 8th from web
  20. New SCOP release http://bit.ly/c2lPy Roughly 200 new superfamilies Covers PDB up to 23/02/094:42 AM Jun 5th from web
  • Name SUPERFAMILY
  • Location England: Cambridge & Bristol
  • Web http://supfam.org/
  • Bio SUPERFAMILY is a database of structural and functional protein annotations for all completely sequenced organisms.
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SciClips Stephanos Pavlides Duncan Hull Jason Stajich David Joly GO News Dictybase GenomeWeb Daily Scan Joint Genome Inst. fungalgenomes